PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.17G102000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 184aa    MW: 20810.4 Da    PI: 10.007
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.17G102000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.43e-33104162159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ +v++tYeg H+h+
  Manes.17G102000.1.p 104 LDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGIVVTTYEGMHTHP 162
                          59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-3489162IPR003657WRKY domain
SuperFamilySSF1182903.92E-3096163IPR003657WRKY domain
PROSITE profilePS5081129.98799164IPR003657WRKY domain
SMARTSM007741.4E-39104163IPR003657WRKY domain
PfamPF031064.7E-27105162IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MEKFQMLFPF SSTGPSYPVS SSAANSHVFN NFQGDPSNGF LGLKIDNQVE VAPRTEVKNL  60
NSSSEGASFA TGSEADLKPG KKKGEKKIRK PRYAFQTRSQ VDILDDGYRW RKYGQKAVKN  120
NKFPRSYYRC THQGCNVKKQ VQRLTKDEGI VVTTYEGMHT HPIEKTTDNF EHILSQMQIY  180
TPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-2894163776Probable WRKY transcription factor 4
2lex_A9e-2894163776Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276270.0KT827627.1 Manihot esculenta WRKY transcription factor 52 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002300120.21e-90hypothetical protein POPTR_0001s33560g
SwissprotQ9FYA26e-58WRK75_ARATH; Probable WRKY transcription factor 75
TrEMBLA0A140H8Q61e-137A0A140H8Q6_MANES; WRKY transcription factor 52
STRINGPOPTR_0001s33560.13e-90(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF115634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.15e-58WRKY DNA-binding protein 75
Publications ? help Back to Top
  1. Wei Y, et al.
    Genome-Wide Identification and Expression Analysis of the WRKY Gene Family in Cassava.
    Front Plant Sci, 2016. 7: p. 25
    [PMID:26904033]